Installing HERA Software on Submit Host

This is the working minimum installation needed to submit HERA calibration jobs to HTCondor at CHTC.

Set Variables (alter this for your account)

export BASE=~/hera/share

Download Miniconda for python-3.7

Install Miniconda

bash ~/download/Miniconda3-latest-Linux-x86_64.sh -p ${BASE}/miniconda3 -b

Activate conda's base environment 

source ${BASE}/miniconda3/bin/activate

Optionally install conda environment in your .bashrc

conda init

Update Conda (381MB)

conda update -y conda

conda install -y pip

Install HERA specific repos (2.6GB)

pip install git+https://github.com/HERA-Team/hera_cal.git

pip install git+https://github.com/HERA-Team/hera_cal.git

    git clone https://github.com/HERA-Team/hera_opm.git

pushd hera_opm

git pull

git checkout condor_v2

pip install .

python setup.py install

popd

Install Makeflow

cd ${BASE}

git clone https://github.com/cooperative-computing-lab/cctools.git

pushd cctools

./configure --prefix=${BASE}/cctools

make clean

make install

    This produces an ignorable error about manuals and doc

export PATH=${PATH}:${BASE}/cctools/bin

popd

Re-install hera_opm

pushd ${BASE}/hera_opm

pip install .

popd

Running

export BASE=~/hera/share

source ${BASE}/miniconda3/bin/activate

export PATH=${PATH}:${BASE}/cctools/bin