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Interactive: The ability to assign all or part of a node to a user with shell level access (nodescheduler, qsub -I, etc), minimal granularity is per NUMA node, finer would be useful. Because Slurm and HTCondor lack the ability to implement nodescheduler, my current thought is to ditch nodescheduler and just use the interactive commands that come with Slurm and HTCondor.
- nodescheduler: Was written before I understood what qsub -I did. Had I known, I may have argued to use qsub -I instead of nodescheduler as it is much simpler, is consistent with other installations of Torque, and may have forced some users to use batch processing which is much more efficient.
- nodescheduler likes
- It's not tied to any tty so a user can login multiple times from multiple places to their reserved node without requiring something like screen, tmux, or vnc. It also means that users aren't all going through nmpost-master.
- Its creation is asynchronous. If the cluster is full you don't wait around for your reservation to start, you get an email message when it is ready.
- It's time limited (e.g. two weeks). We might be able to do the same with a queue/partition setting but could we then extend that reservation?
- We get to define the shape of a reservation (whole node, NUMA node, etc). If we just let people use qsub -I they could reserve all sorts of sizes which may be less efficient. Then again it may be more efficient. But either way I think nodescheduler it is simpler for our users.
- It's not tied to any tty so a user can login multiple times from multiple places to their reserved node without requiring something like screen, tmux, or vnc. It also means that users aren't all going through nmpost-master.
- nodescheduler: dislikes
- With Toruqe/Moab asking for a NUMA node doesn't work as I would like. Because of bugs and limitations, I still have to ask for a specific amount of memory. The whole point of asking for a NUMA node was that I didn't need to know the resources of a node ahead of time but could just ask for half of a node. Sadly, that doesn't work with Torque/Moab.
- Because of the way I maintain the cgroup for the user, with /etc/cgrules.conf, I cannot let a user have more than one nodescheduler job on the same node or it will be impossible to know which cgroup an ssh connection should use. The interactive commands (qsub -I, etc) don't have this problem.
- Slurm - I think the biggest blocker here is slurm doesn't have an equivalent to naccesspolicy=uniqueuser.
- srun -p interactive --pty bash This logs the user into an interactive shell on a node with defaults (1 core, 1 GB memory) in the interactive partition.
- NUMA I don't see how Slurm can reserve NUMA nodes so we may have to just reserve X tasks with Y memory.
- naccesspolicy=uniqueuser I don't know how to keep Slurm from giving a user multiple portions of the same host. With Moab I used naccesspolicy=uniqueuser which prevents the ambiguity of which ssh connection goes to which cgroup. I could have nodescheduler check the nodes and assign one that the user isn't currently using but this is starting to turn nodescheduler into a scheduler of its own and I think may be more complication than we want to maintain.
- cgrules Slurm has system-level prolog/epilog functionality that should allow nodesceduler to set /etc/cgrules.conf but pam_slurm_adopt.so pretty much removes the need for /etc/cgrules.conf.
- PAM If we use pam_slurm_adopt instead of pam_slurm, we don't need my /etc/cgrules.conf hack. pam_slurm_adopt will put the user in the cgroup of the job scheduled to run the longest. This still doesn't solve the problem of multiple interactive jobs by the same user on the same node.
- nodeextendjob Can Slurm extend the MaxTime of an interactive job? Yes scontrol update TimeLimit=7 JobId=489 This sets the MaxTime to seven minutes.
- HTCondor
- condor_submit -i This logs the user into an interactive shell on a node with defaults (1 core equivelent, 0.5 GB memory)
- NUMA I don't see how HTCondor can reserve NUMA nodes so we may have to just reserve X tasks with Y memory.
- naccesspolicy=uniqueuser I don't think I need to worry about giving a user multiple portions of the same host if we are using condor_ssh_to_job.
- cgrules I don't know if HTCondor has the prologue/epilogue functionality to implement my /etc/cgrules.conf hack.
- PAM How can we allow a user to login to a node they have an interactive job running on via nodescheduler? With Torque or Slurm there are PAM modules but there isn't one for HTCondor.
- Could run a sleep job just like we do with Torque and use condor_ssh_to_job which seems to do X11 properly. We would probably want to make gygax part of the nmpost pool.
- nodevnc
- Given the limitation of Slurm and HTCondor and that we already recommend users use VNC on their interactive nodes, why don't we just provide a nodevnc script that reserves a node (via torque, slurm or HTCondor), start a vnc server and then tells the user it is ready and how to connect to it? If someone still needs/wants just simple terminal access, then qsub -I or srun --pty bash or condor_submit -i might suffice.
- But of course there is another problem. This time it is because Slurm and HTCondor don't actually run /bin/login so proper things like /run/user/<USERID> are not created and vncserver produces a Call to lnusertemp failed.
- NO: try /bin/bash -l
- NO: try --get-user-eval=L
- NO: try --get-user-eval=S
- nodescheduler: Was written before I understood what qsub -I did. Had I known, I may have argued to use qsub -I instead of nodescheduler as it is much simpler, is consistent with other installations of Torque, and may have forced some users to use batch processing which is much more efficient.
Reaper: Clean nodes of unwanted files, dirs and procs. I don't think HTCondor will need this.
Slurm - pam_slurm_adopt seems to kill errant procs but will still need a reaper script for files/dirs.
- If I run vncserver via Torque, my reaper script has to kill a bunch of processes when the job is done. But when I run vncserver via Slurm those processes remain. So we will need some sort of reaper-type script for Slurm.
- There is https://slurm.schedmd.com/pam_slurm_adopt.html that tracks and kills errant processes but it conflicts with systemd and therefore requires some special installation instructions.
- Aha. I may have it working. You have to add PrologFlags=contain to both the client and server slurm.conf files.
- But it doesn't delete files or directories from /tmp, /var/tmp, or /dev/shm when the job ends.
- I will have to write a reaper script for files/dirs to use in Slurm system epilogs.
- Feb. 22, 2021 krowe: I think I have a working reaper script for slurm. (/users/krowe/reaper/slurm/slurm_reaper.py) It needs more testing.
- HTCondor - Doesn't seem to need file/dirs nor proc reaped.
- Seems to handle /tmp, /var/tmp, and /dev/shm properly because it uses fake versions of these dirs for each job.
- It seems to handle errant processes as well.
- There is also condor_preen that cleans condor directories like /var/lib/condor/spool/...
- Seems to handle /tmp, /var/tmp, and /dev/shm properly because it uses fake versions of these dirs for each job.
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