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This needs some modification. It calls a script from Josh's homedir and runs bdsf out of /lustre. Also, I have been unable to run this task by itself. I get the following errors. I am going to combine this with tasks18, 20 and 21 so it isn't an issue right now.
2020-07-29 16:13:07 SEVERE exportfits::image::tofits (file ../../tools/images/image_cmpt.cc, line 6211) Exception Reported: Exception: File VIP_iter1b.image.smooth5.fits exists, and the user does not want to remove it..
2020-07-29 16:13:07 SEVERE exportfits::image::tofits (file ../../tools/images/image_cmpt.cc, line 6211)+ ... thrown by static void casa::ImageFactory::_checkOutfile(const casacore::String&, casacore::Bool) at File: ../../imageanalysis/ImageAnalysis/ImageFactory2.cc, line: 568
2020-07-29 16:13:07 SEVERE exportfits::::@testpost001:MPIClient An error occurred running task exportfits.
Doesn't alter the MS
subprocess.call(['/users/jmarvil/scripts/run_bdsf.py', imagename_base+'iter1b.image.smooth5.fits'],env={'PYTHONPATH':''})
- input: ../data
- input: VIP_iter1b.image.smooth5.fits
- input: ??
- output: ??
Task20
edit_pybdsf_islands(catalog_fits_file=imagename_base+'iter1b.image.smooth5.cat.fits')
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